species:   Drmel
pid:       MI0005865
parent:    dme-mir-1004
paralog:   
locus:     NT_033779.5:3767621-3767688
matures:   ['UCUCACAUCACUUCCCUCACAG', 'UUGGGGGACAUUGAUCUCGGAGA']
srr:       SRR11906543
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram NT_033779.5:3767621-3767688

6 out of bounds
83 alignments
83 proper strand
69 stranded perfect matches

************************                    ************************
GUUGGGGGACAUUGAUCUCGGAGACGGCGGUUUAACUGAUCCAUUCUCUCACAUCACUUCCCUCACAG
..(((((((...((((...(((((..(.((((.....)))))..)))))...))))..)))))))...
----------------------------------------------UCUCACAUCACUUCCCUCACAG l=22 a=57 c
-UUGGGGGACAUUGAUCUCGGAGA-------------------------------------------- l=23 a=0 c*
----------------------------------------------UCUCACAUCACUUCCCUCACAG l=22 a=57 ma
-UUGGGGGACAUUGAUCUCGGAGA-------------------------------------------- l=23 a=0 ma*

GUUGaGGGACAUUGAUCUCGGA---------------------------------------------- l=22 a=1 
GUUGaGGGACAUUGAUCUCGGAG--------------------------------------------- l=23 a=5 
GUUGaGGGACAUUGAUCUCGGAGA-------------------------------------------- l=24 a=6 
-------------------------------------------UUCUCUCACAUCACUUCCCUCACAG l=25 a=1 
----------------------------------------------UCUCACAUCACUUCCCUCAC-- l=20 a=1 
----------------------------------------------UCUCACAUCACUUCCCUCACA- l=21 a=9 
----------------------------------------------UCUCACAUCACUUCCCUCACAG l=22 a=57 (c,ma)
----------------------------------------------UCUCACAUCACUUCCaUCACAG l=22 a=1 
----------------------------------------------UCUuACAUCACUUCCCUCACAG l=22 a=1 
-----------------------------------------------CUCACAUCACUUCCCUCACAG l=21 a=1 

mb-01111
ax-1001111
ku-01
ss-111111101110
fn-111
